Projects & Decks
Code
Platelet whole-cell model
Extending the wcEcoli framework to model human platelet activation. Containerised simulation environment with a Dash exploration UI.
Other repos
Slide decks
Decks are written as Quarto Reveal.js (.qmd) sources and rendered to HTML, PDF, and PPTX so each can be browsed in-page or downloaded.
How do LLMs work? — a shallow-dive for scientists
Dash lab meeting, 30 April 2026 — a non-rigorous overview of large language models aimed at lab-group scientists: what an LLM actually is, embeddings, attention, RLHF, where they help, and where they bite.
The feasibility of a whole-cell model of the human platelet
Dash lab meeting, 21 May 2026 — a five-step recipe for building a calibrated platelet Ca²⁺ model on the wcEcoli framework, with some notes on AI-assisted data extraction and a typo I found in a well-cited 2008 paper.
Academic deck template
A pared-back PPTX template for academic talks — content fills the slide, two-column layouts as the default, section breadcrumbs instead of divider slides. Background and design notes in the blog.